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Is Hidden Mold in Everyday Foods Hurting Your Gut Microbiome?

Evidence Based

iHerb has strict sourcing guidelines and draws from peer-reviewed studies, academic research institutions, medical journals, and reputable media sites. This badge indicates that a list of studies, resources, and statistics can be found in the references section at the bottom of the page.

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Key Takeaways

  • Mold can grow on a variety of foods. Moisture, storage conditions, and shelf life can all influence mold development.
  • Some molds produce compounds called mycotoxins: These naturally occurring substances are generated by certain types of fungi.
  • Not all mold is visible: Foods may contain mold growth or contamination even when spoilage isn’t obvious.
  • Storage and handling practices matter: Refrigeration, proper sealing, and monitoring expiration dates may help reduce mold growth on foods.
  • Certain foods are more susceptible than others: Grains, nuts, dried fruit, coffee, and produce are among the items more commonly discussed in relation to mycotoxins.

No matter where you go, you come in contact with mold. It’s in the air and in the soil, in your bathroom and under your kitchen sink.

And, sometimes, in your food.

As food molds grow, they produce compounds called mycotoxins, which have the potential to disrupt your gut health and make you sick.

Food Molds and Mycotoxins

Molds that produce mycotoxins aren’t always as obvious as those fuzzy blobs on the bread ends you forgot about in the back of your fridge. They’re typically found in food and feed crops that aren’t processed, stored, or handled correctly or are exposed to damp conditions. It’s estimated that mycotoxins may contaminate up to 80% of food crops around the world.

Common mycotoxins and their sources include:

  • Aflatoxin: peanuts, corn, tree nuts, small grains like rice
  • Deoxynivalenol: bread, noodles, beer, popcorn, and grains like wheat, corn, oats, and barley
  • Fumonisins: corn and sometimes other grains
  • Paulin: fruit, grains, nuts, cheese, apples, and apple juice made from contaminated apples
  • Ochratoxin A: coffee, grapes, wine, and grains like wheat, rye, oats, and barley
  • T-2 and HT-2 toxins: grains, including wheat, rye, and barley
  • Zearalenone: corn, oats, wheat, sorghum, rice, and other grains

You can be exposed to mycotoxins by eating these foods or products made from animals that ate contaminated feed.

Do Mycotoxins in Food Hurt Your Gut?

Chronic mycotoxin exposure may cause long-term health effects, which may be influenced by how these compounds impact your gut’s microbiome and tissue.

Mycotoxins may damage your gut lining

Your gut is lined with a layer of cells called epithelial cells held tightly together by junction proteins and covered with a barrier of mucus. The proteins ensure that food and microbes stay in the gut, and the mucus lubricates and protects your gut tissues.

Mycotoxins like ochratoxin and zearalenone may damage this barrier by reducing the production of junction proteins and mucus. They may also promote inflammation by activating gut immunity and increasing the levels of pro-inflammatory compounds called cytokines, which can damage or destroy the epithelial cells lining your gut.

When your gut’s lining is damaged, food particles, bacteria, and toxins can “leak” between cells into your bloodstream and trigger immune responses in other parts of your body, which may contribute to inflammatory disorders and autoimmunity.

Mycotoxins may disrupt gut microbiome balance

A balanced microbiome is also essential to keeping your gut healthy. But mycotoxin exposure can affect microbial balance at every level from phylum to species. Animal studies on mycotoxin exposure have shown changes in the microbiome’s structure and diversity that include:

  • Fewer beneficial bacteria, like Lactobacillus
  • More pathogens like Mycoplasma
  • A shift in the ratio between Firmicutes and Bacteroidetes

Decreased diversity and microbial imbalances in the gut have been linked to a variety of health problems, including cardiovascular disease, autoimmune disorders, and inflammatory bowel disease (IBD).

Can Your Gut Microbiome Protect Against Mycotoxins?

But mycotoxins may not be as much of a problem if you already have a healthy population of microbes in your gut. Beneficial gut bacteria, including lactic acid bacteria like Lactobacillus, Mycobacterium, and Rhodococcus, may be able to convert mycotoxins into less-toxic or non-toxic compounds that your body can eliminate safely. In vitro studies show that some bacteria can reduce the concentration of mycotoxins by up to 98%. Bacteria and yeasts may also remove mycotoxins from the gut environment by binding them to compounds in their cell walls.

A few probiotic species have been tested for their potential to stimulate mycotoxin removal. Some studies show that yeasts in the Saccharomyces genus and bacteria like Lactobacillus rhamnosus, Lactobacillus plantarum, and Lactobacillus pentosus may be able to break down or bind these toxic compounds. But more research is needed to understand how these strains of probiotics may affect mycotoxin levels in humans.

How to Protect Your Gut From Mold and Mycotoxins

The Joint Food and Agriculture Organization/World Health Organization Expert Committee on Food Additives (JECFA) has established safe maximum daily intake levels for mycotoxins from food. Known as health-based guidance values (HBGV), these numbers represent the highest level of each mycotoxin you can be exposed to per day over a lifetime without any noticeable impact on your health. Additionally, the FDA monitors mycotoxin levels to minimize the risk of contaminated products entering the food supply.

You can also take steps to prevent mold and mycotoxins from forming on foods in your home. To reduce your exposure:

  • Inspect dry goods like grains, nuts, and dried fruit. Throw away anything that looks moldy, discolored, or shriveled.
  • Inspect the food in your fridge frequently for mold. Throw out fresh, packaged, or prepared foods that have visible mold.
  • Freeze uneaten leftovers within three to four days.
  • Don’t try to trim or skim molds off soft and liquid foods. Mold spreads more easily through these foods and may not always be visible.
  • Store dry goods in airtight containers in a cool, dry place.
  • Transfer packaged foods like cookies, chips, and crackers into airtight containers for storage.
  • Clean fridge drawers, bread boxes, and other food storage spaces often.
  • Eat a diverse diet to support a healthy microbiome. 

References:

  1. Food and Agriculture Organization of the United Nations. (2024). Joint FAO/WHO Expert Committee on Food Additives (JECFA): Scientific advice on food contaminants and natural toxins. World Health Organization.
  2. Gasperini, A. M., Faccenda, D., & Garcia-Cela, E. (2025). Unravelling the impact of mycotoxins on gut health: implications for inflammatory bowel disease. Current Opinion in Food Science, 64, Article 101316. 
  3. Liew, W.-P.-P., & Thanusha, S. (2020). Mycotoxins: Occurrence, toxicity, and mitigating strategies. Toxins, 12(12), Article 760. 
  4. Pedroza Matute, S., & Iyavoo, S. (2023). Exploring the gut microbiota: Lifestyle choices, disease associations, and personal genomics. Frontiers in Nutrition, 10, Article 1225120.
  5. Piotrowska, M., Slizewska, K., & Zakowska, Z. (2021). Deoxynivalenol and zearalenone: Changing the profile of the gut microbiota. Frontiers in Microbiology, 12, Article 643639. 
  6. Schreiber, F., Balas, I., Robinson, M. J., & Bakdash, G. (2024). Border control: The role of the microbiome in regulating epithelial barrier function. Cells, 13(6), Article 477. 
  7. U.S. Food and Drug Administration. (2023). Mycotoxins in food: Regulatory guidance and background. U.S. Department of Health and Human Services.
  8. U.S. Food Safety and Inspection Service. (2024). Leftovers and food safety: Storage, handling, and cooling basics. U.S. Department of Agriculture.
  9. Vila-Donat, P., Marín, S., Sanchis, V., & Ramos, A. J. (2021). A review of the mycotoxin modulating capacity of different food processing techniques. Food Control, 121, Article 107620. 
  10. World Health Organization. (2023, December 1). Mycotoxins: Fact sheet. World Health Organization Newsroom.

DISCLAIMER: These statements have not been approved by the Food and Drug Administration. These products are not intended to diagnose, treat, cure, or prevent disease.